The University of Arizona
Tour: viewSingle Pairs
  AGCoL | TCW Home | Doc Index | Tour | runAS | runSingleTCW | runDE | viewSingleTCW | runMultiTCW | viewMultiTCW
viewSingleTCW - View and Query Single Species
Start | Sequence Table | Sequence Detail | Basic Sequence | AnnoDB Hits | GO Annotations | Pairs

Similar Pairs
In runSingleTCW, there is an annotation option to compare all sequences. If this has been run, then there will be a Similar Pairs section.

The Hit E-value and Hit %Sim are from the blast (or diamond) hit file, the rest of the numeric columns are from dynamic programming alignment of the pair.


Select a row followed by Align Selected Pair to view the nucleotide and amino acid alignment using the best frame.


Select a row followed by View Sequence and the sequences will be shown in the main Sequence Table.

Go to top
Email Comments To: