viewSingleTCW - View and Query Single Species
In runSingleTCW, there is an annotation option to compare all sequences.
If this has been run, then there will be a Similar Pairs section.
The Hit E-value and Hit %Sim are from the blast (or diamond) hit file,
the rest of the numeric columns are from dynamic programming
alignment of the pair.
Select a row followed by Align Selected Pair to view the nucleotide and amino acid alignment using
the best frame.
Select a row followed by View Sequence and the sequences will be shown in the main Sequence Table.