References: |
C. Soderlund, W. Nelson and S. Goff (2014)
Allele Workbench: transcriptome pipeline and interactive graphics for allele-specific expression.
PLOS ONE.
Link
Describes a pipeline that can be used with TCW, plus a new GO trim algorithm.
C. Soderlund, W. Nelson, M. Willer and D. Gang (2013)
TCW: Transcriptome Computational Workbench. PLOS ONE.
Link
Describes the TCW package.
C. Soderlund, E. Johnson, M. Bomhoff, and A. Descour (2009)
PAVE: Program for Assembling and Viewing ESTs. BMC Genomics.
Link
Describes the assembly algorithm.
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