The University of Arizona
HICF and Automerge  
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Written by Will Nelson     June 2004

1. Introduction

This tutorial covers the construction of HICF fingerprint maps within FPC v8, and the automatic end-merging of contigs. Both of these involve new features added to v8 to facilitate construction of the AGI/PGIR Maize HICF map.

At this point, you should download the demo files from here. To unpack, type

tar xzvf hicf_auto.tar.gz 
This will create a directory called hicf_auto_demo that contains two subdirectories, hicf and auto.

Next choose one of the topics below.

       1.1. FPC and HICF

       1.2. Automerge

       1.3. Decontamination



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Last Modified Wednesday October 29, 2008 14:58 PM and 05 seconds