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   Home of the Soderlund lab
   The Soderlund lab is part of the BIO5 Institute at the University of Arizona
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   Projects
  SyMAP  Synteny Mapping and Analysis Program - multigenome showcase
  Plant rhizomes  Transcriptome analysis of various species
  Homoptera  Transcritome analysis of various species
  MGOS  Magnaporthe Oryzae Community Database
  Maize FL cDNA's  27,455 Full Length cDNA's
  Maize mini-BACs  Gene-rich sequences aligned to maize BACs
  Kartchner Cavern  Metagenomics of various regions of the cave
  Heterosis  Allele Specific Expression of SNPs for mouse hybrids

   PAVE (TCW) - transcriptome analysis (web interface)
  v1: Basil | Ginger-Turmeric | Cotton | M. grisea | Maize | Trichomes | Elm
  v2: Reed Rhizomes | Psyllids

   FPC Maps - fingerprint assembly (web interface)
  Maize | Rice | Sorghum | Soybean

   Software
  FPC | SyMAP | TCW | AW
 
Supported By: BIO5
BIO5
University of Arizona
UA
National Science Foundation
NSF
United States Department of Agriculture
USDA
Recent News



Dec 2014
Psyllids
Published psyllid TCW comparison.

Aug 2014
AW v1.0
Allele Workbench: software for allele-specific expression.

Other news

SyMAP v4.2
Major upgrades (see release) and CA signed java applet.

TCW v1.3
Transcriptome Computational Workbench with single and multiple species analysis, with publication

iPlant
SyMAP, TCW and AW are available as iPlant Atmosphere Images.

FPC v9.4 release
Support for sequence-based fingerprints
Email comments to: www@agcol.arizona.edu