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   Home of the Soderlund lab
   The Soderlund lab is part of the BIO5 Institute at the University of Arizona
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   Current Projects 2015
  SyMAP  Synteny Mapping and Analysis Program - multigenome showcase
  Plant rhizomes  Transcriptome analysis of various species
  Homoptera  Transcritome analysis of various species
  Heterosis  Allele Specific Expression of SNPs for mouse hybrids
   Previous Projects
  MGOS  Magnaporthe Oryzae Community Database
  Maize FL cDNA's  27,455 Full Length cDNA's
  Maize mini-BACs  Gene-rich sequences aligned to maize BACs
  Kartchner Cavern  Metagenomics of various regions of the cave

   PAVE(cgi)-TCW(java) - transcriptome analysis projects
  PAVE: Basil | Ginger-Turmeric | Cotton | M. grisea | Maize | Trichomes | Elm
  TCW:  Reed Rhizomes | Psyllids

   FPC Maps - fingerprint assembly (web interface)
  Maize | Rice | Sorghum | Soybean

   Software
  FPC | SyMAP | TCW | AW
 
Supported By: BIO5
BIO5
University of Arizona
UA
National Science Foundation
NSF
United States Department of Agriculture
USDA
Recent News



Aug 2015
TCW v1.3.4
Option to use super-fast blast-like Diamond or Ublast. Allows input of locations information.

June 2015
Psyllids
Published psyllid TCW comparison.

Aug 2014
AW v1.0
Allele Workbench: software for allele-specific expression.

Other news

SyMAP v4.2
Major upgrades (see release) and CA signed java applet.

iPlant
SyMAP, TCW and AW are available as iPlant Atmosphere Images.

FPC v9.4
Support for sequence-based fingerprints
Email comments to: www@agcol.arizona.edu