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   Home of the Soderlund lab
   The Soderlund lab is part of the BIO5 Institute at the University of Arizona
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   Current Projects 2016
  SyMAP  Synteny Mapping and Analysis Program - multigenome showcase
  Plant rhizomes  Transcriptome analysis of various species
  Homoptera  Transcritome analysis of various species
  Heterosis  Allele Specific Expression of SNPs for mouse hybrids
   Previous Projects
  MGOS  Magnaporthe Oryzae Community Database
  Maize FL cDNA's  27,455 Full Length cDNA's
  Maize mini-BACs  Gene-rich sequences aligned to maize BACs
  Kartchner Cavern  Metagenomics of various regions of the cave

   PAVE(cgi)-TCW(java) - transcriptome analysis projects
  PAVE: Basil | Ginger-Turmeric | Cotton | M. grisea | Maize | Trichomes | Elm
  TCW:  Rhizomes | Psyllids

   FPC Maps - fingerprint assembly (Java unsigned applet)
  Maize | Rice | Sorghum | Soybean

   Software
  FPC | SyMAP | TCW | AW
 
Supported By: BIO5
BIO5
University of Arizona
UA
National Science Foundation
NSF
United States Department of Agriculture
USDA
News



June 2016
TCW v1.6
Java interface for downloading UniProt taxonomic files and GO database for TCW annotation, plus various interface enhancements.

Feb 2016
TCW v1.4
Option to use super-fast blast-like Diamond or Ublast. Input of locations information. Flexible DE computation. Extensive GO queries.

Other news

Psyllids
Published psyllid TCW comparison.

AW v1.0
Allele Workbench: software for allele-specific expression.

SyMAP v4.2
Major upgrades (see release) and CA signed java applet.

FPC v9.4
Support for sequence-based fingerprints
Email comments to: www@agcol.arizona.edu