The University of Arizona
   Home of the Soderlund lab
   The Soderlund lab is part of the BIO5 Institute at the University of Arizona
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  SyMAP  Synteny Mapping and Analysis Program - multigenome showcase
  Plant rhizomes  Transcriptome analysis of various species
  Homoptera  Transcritome analysis of various species
  MGOS  Magnaporthe Oryzae Community Database
  Maize FL cDNA's  27,455 Full Length cDNA's
  Maize mini-BACs  Gene-rich sequences aligned to maize BACs
  Kartchner Cavern  Metagenomics of various regions of the cave
  Heterosis  Allele Specific Expression of SNPs for mouse hybrids

   PAVE (TCW) - transcriptome analysis (web interface)
  v1: Basil | Ginger-Turmeric | Cotton | M. grisea | Maize | Trichomes | Elm
  v2: Reed Rhizomes | Psyllids

   FPC Maps - fingerprint assembly (web interface)
  Maize | Rice | Sorghum | Soybean

Supported By: BIO5
University of Arizona
National Science Foundation
United States Department of Agriculture
Recent News

Apr 2014

SyMAP v4.2
Major upgrade includes scalable vector image save, improved handling of draft projects, simplified (no-CGI) web display system, and CA signed java applet.

SyMAP and TCW now available through iPlant Atmosphere!

Other news

TCW v1.2
Transcriptome Computational Workbench with single and multiple species analysis, with publication

Kartchner Caverns
Publication and release

Elm, Reed and Trichomes published PAVE assemblies.

FPC v9.4 release
Support for sequence-based fingerprints
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