The University of Arizona
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   AGCoL Information
   AGCoL is part of the BIO5 Institute at the University of Arizona, Tucson.
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   Projects
  SyMAP  Synteny Mapping and Analysis Program - multigenome showcase
  Plant rhizomes  Transcriptome analysis of various species
  Homoptera  Transcritome analysis of various species
  MGOS  Magnaporthe Oryzae Community Database
  Maize FL cDNA's  27,455 Full Length cDNA's
  Maize mini-BACs  Gene-rich sequences aligned to maize BACs

   PAVE - transcriptome analysis (web interface)
  v1: Basil | Ginger-Turmeric | Cotton | M. grisea | Maize | Trichomes | Elm
  v2: Reed Rhizomes | Psyllids

   FPC Maps - fingerprint assembly (web interface)
  Maize | Rice | Sorghum | Soybean

   Software
  FPC | SyMAP | PAVE
 
Supported By: BIO5
BIO5		 University of Arizona
UA		 National Science Foundation
NSF		 United States Department of Agriculture
USDA
Recent News




Jan 2012

SyMAP v3.5 release
Major upgrades including Java circle-view, flexible annotation query, parameter editing window.


Other recent news

Elm, Reed and Trichomes published PAVE assemblies.

PAVE v3 release
Major upgrades including support for assembly of transcripts and improved interface.

SyMAP v3.4 publication

FPC v9.4 release
Support for sequence-based fingerprints

New site for Asian Citrus Psyllid
Email comments to: www@agcol.arizona.edu