The University of Arizona
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   Home of the Soderlund lab
   The Soderlund lab is part of the BIO5 Institute at the University of Arizona
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   Projects
  SyMAP  Synteny Mapping and Analysis Program - multigenome showcase
  Plant rhizomes  Transcriptome analysis of various species
  Homoptera  Transcritome analysis of various species
  MGOS  Magnaporthe Oryzae Community Database
  Maize FL cDNA's  27,455 Full Length cDNA's
  Maize mini-BACs  Gene-rich sequences aligned to maize BACs
  Kartchner Cavern  Metagenomics of various regions of the cave

   PAVE (TCW) - transcriptome analysis (web interface)
  v1: Basil | Ginger-Turmeric | Cotton | M. grisea | Maize | Trichomes | Elm
  v2: Reed Rhizomes | Psyllids

   FPC Maps - fingerprint assembly (web interface)
  Maize | Rice | Sorghum | Soybean

   Software
  FPC | SyMAP | TCW
 
Supported By: BIO5
BIO5
University of Arizona
UA
National Science Foundation
NSF
United States Department of Agriculture
USDA
Recent News




Jan 2014
TCW v1.2
Transcriptome Computational Workbench with single and multiple species analysis, with publication

Other recent news

Kartchner Caverns
Publication and release


SyMAP v4.0 release
Major upgrades including project creation through GUI Manager; additional query filters and gene family clustering; self-alignments.


Elm, Reed and Trichomes published PAVE assemblies.

FPC v9.4 release
Support for sequence-based fingerprints
Email comments to: www@agcol.arizona.edu