The University of Arizona
SyMAP Rosids Synteny v1
AGCoL | SyMAPdb | SyMAP Software
Synteny of two varieties of Arabidopsis (thaliana [1] and lyrata), Vitis vinifera ("common grape vine") [4], Medicago truncatula [2], Glycine max ("soybean") [5], and Populus trichocarpa ("poplar") [6]. These syntenies were computed in the year of 2012.
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SyMAP database
SyMAP nameSpeciesType
A. thalianaArabidopsis thalianasequence
A. lyrataArabidopsis lyratadraft (8 largest scaffolds)
B. RapaBrassica rapa (field mustard)sequence
SoybeanGlycine maxsequence
PoplarPopulus trichocarpa (black cottonwood)sequence
MedicagoMedicago truncatula (barrel medic)sequence
GrapeVitis vinifera (wine grape)sequence
References
  1. Arabidopsis Sequencing Consortium, 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815.
  2. Cannon SB, et al. Databases and information integration for the Medicago truncatula genome and transcriptome. Plant Physiol. 2005 May;138(1):38-46.
  3. Hee Shin, J., et al. 2008. The lipoxygenase gene family: a genomic fossil of shared polyploidy between Glycine max and Medicago truncatula. BMC Plant Biology 8:133.
  4. Jaillon, O., et al. 2007. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 449, 463-467.
  5. Mudge, J., S.B. Cannon, P. Kalo, G.E. Oldroyd, B.A. Roe, C.D. Town, and N.D. Young. 2005. Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana. BMC Plant Biol 5: 15.
  6. Tuskan GA, et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science. 2006 Sep 15; 313(5793):1596-604.
Resources
Email: symap@agcol.arizona.edu