The University of Arizona
SyMAP Rosids Synteny v2 (2018)
AGCoL | SyMAPdb | SyMAP Software
Synteny of sequenced genomes annotations from Rosids1

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SyMAP Rosids database
SyMAP name Species NCBI file prefix
A. thaliana Arabidopsis thalianaGCF_000001735.3_TAIR10
B. rapa Brassica rapa (field mustard) GCF_000309985.1_Brapa_1.0
Poplar Populus trichocarpa (black cottonwood) GCF_000002775.3_Poptr2
Apple Malus domestica GCF_000148765.1_MalDomGD1.0
Peach Prunus persicaGCF_000346465.2_Prunus_persica_NCBIv2
Strawberry Fragaria x ananassa GCF_000184155.1_FraVesHawaii_1.0
Soybean Glycine max GCF_000004515.4_Glycine_max_v2.0
Medicago Medicago truncatula (barrel medic )GCF_000219495.3_MedtrA17_4.0
GrapeVitis vinifera (wine grape)GCF_000003745.3_12X
Resources1
  • All genome sequences and GFF annotations were downloaded from NCBI in January 2018.
  • The files were reformated for SyMAP using the NCBI to SyMAP script.
  • The syntenies were computed with SyMAP using default parmeters.
  • The information for the tree was obtained from JGI Pytozome "tree representation".
Email: symap@agcol.arizona.edu