The University of Arizona
SyMAP Poaceae Synteny v2 (2018)
AGCoL | SyMAPdb | SyMAP Software
Synteny of sequenced genomes and annotations for Poaceae (the "grasses")1.

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SyMAP Poaceae database
SyMAP nameSpeciesNCBI file prefix
MilletSetaria italica (Foxtail millet) GCF_000263155.2_Setaria_italica_v2.0
SorghumSorghum bicolor (Sorbi1)GCF_000003195.3_Sorghum_bicolor_NCBIv3
MaizeZea mays (B73)GCF_000005005.2_B73_RefGen_v4
BrachyBrachypodium distachyonGCF_000005505.2_Brachypodium_distachyon_v2.0
RiceOryza sativa (Japonica)GCF_001433935.1_IRGSP-1.0
Resources1
  • All genome sequences and GFF annotations were downloaded from NCBI in January 2018.
  • The files were reformated for SyMAP using the NCBI to SyMAP script.
  • The syntenies were computed with SyMAP using default parmeters.
  • The information for the tree was obtained from JGI Pytozome "tree representation".
Email: symap@agcol.arizona.edu