The University of Arizona
SyMAP Maize/Sorghum Alignments to IRGSP v4.0 pseudomolecules
 
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This work is funded by NSF DBI-0115903. More information is available at the CGGC (Comparative Grass Genomics Center).

SyMAP v1.0 release (September 2006)*.  Documentation and download here.

Choose from the options below to view syntenic relationships between maize, sorghum bicolor, sorghum propinquum, and IRGSP v4.0 rice pseudomolecules. SyMAP is also available for mouse to human.


FPC Map to Rice IRGSP:
  Synteny alignments between maize/sorghum FPC contigs and IRGSP pseudomolecules

Dual Alignments: Left FPC Map:  Right FPC Map: 
Rice Chrom:    
  Simultaneous alignment of two maize/sorghum FPC maps to rice IRGSP

*The displays on this page include several enhancements to be incorporated in a subsequent release of SyMAP.

Reference
Soderlund, C., W. Nelson, A. Shoemaker, A. Paterson. SyMAP: A system for discovering and viewing syntenic regions of FPC maps. Genome Research 16:1159-1168. Download


 
Email Comments To: symap@agcol.arizona.edu

 

 

 

Last Modified Tuesday March 11, 2008 09:12 AM and 08 seconds