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This work is funded by NSF DBI-0115903. More information is available at the CGGC (Comparative Grass Genomics Center).

SyMAP v2.0 released May 18th, 2007*. Documentation (release notes) and download here.


Choose from the options below to view syntenic relationships between maize, sorghum bicolor, sorghum propinquum, and the TIGR v5.0 rice pseudomolecules (or IRGSP rice pseudomolecules). SyMAP is also available for mouse and human.


FPC Map to TIGR rice:
  Synteny alignments between maize/sorghum FPC contigs and TIGR rice pseudomolecules

FPC Map to FPC Map:
  Synteny alignments between maize/sorghum FPC contigs

Dual Alignments: Left FPC Map:  Right FPC Map: 

Rice Chrom:    
  Simultaneous alignment of two maize/sorghum FPC maps to rice

Resources
IRGSP Build 4.0
Maize FPC map
Sorghum Bicolor FPC map, Propinquum
Reference
Soderlund, C., W. Nelson, A. Shoemaker, A. Paterson. SyMAP: A system for discovering and viewing syntenic regions of FPC maps. Genome Research 16:1159-1168. Download
Wei, F., E. Coe, W. Nelson, A. Bharti, F. Engler, E. Butler, H. Kim, J. Goicoechea, M. Chen, S. Lee, G. Fuks, H. Sanchez-Villeda, S. Schroeder, Z. Fang, M. McMullen, G. Davis, J. Bowers, A. Paterson, M. Schaeffer, J. Gardiner, K. Cone, J. Messing, C. Soderlund, and R. Wing (2007). Physical and Genetic Structure of the Maize Genome Reflects its Complex Evolutionary History. PLoS Genetics Vol 3, Issue 7, e123. Download

Email Comments To: symap@agcol.arizona.edu