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SyMAP v3.5 (Synteny Mapping and Analysis Program) is a software package for detecting and displaying
syntenic relationships between sequenced chromosomes (pseudomolecules) and/or FPC physical maps.
- The SyMAP package, which can be downloaded below, includes demo files for synteny computation using fully
sequenced chromosomes ("pseudomolecules"), draft contig sets, and FPC physical maps.
- The System Guide provides instructions on the running the demo and creating projects;
the User Guide explains the interactive displays.
- SyMAP can run as a standalone desktop application or from the web.
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This project is supported by the
National Research Initiative of USDA's National Institute of Food and Agriculture,
grant
#0214643.
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Reference
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C. Soderlund, W. Nelson, A. Shoemaker and A. Paterson (2006)
SyMAP: A system for discovering and viewing syntenic regions of FPC maps.
Genome Research 16:1159-1168.
Link
C. Soderlund, M. Bomhoff, and W. Nelson (2011) SyMAP v3.4: a turnkey synteny system with application to plant genomes Nucleic Acids Research doi: 10.1093/nar/gkr123
Link
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