SyMAP (Synteny Mapping and Analysis Program) v2.0 is a software package for detecting and displaying syntenic relationships between an FPC map and sequenced genome. (see Soderlund et al. 2007).

Coming soon: SyMAP v3.0 has been extended to include sequence to sequence synteny, the synteny finding algorithm has been re-written in Java, a Project Manager has been developed in Java, and the graphics have been greatly enhanced as shown in www.symapdb.org. If you would like a beta version, email us at symap@agcol.arizona.edu.

This work was funded by the National Science Foundation, grant #0115903.

Latest release:   SyMAP v2.0   release notes

Download Documentation   Web User Guide   Installation Guide Links using SyMAP Package   Demo   SyMAP website

Dotplot: View larger image

Alignment: View larger image

Reference

C. Soderlund, W. Nelson, A. Shoemaker and A. Paterson (2006) SyMAP:A system for discovering and viewing syntenic regions of FPC maps. Genome Research 16:1159-1168. Download

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