This work was funded by the National Science Foundation, grant #0501857 and #0321683.

PAVE (Program for Assembling and Viewing ESTs) is a software package for clustering and assembling ESTs, and then annotating and viewing the assembly. The PAVE algorithm uses mate-pair information with an incremental assembly process. PAVE provides a Java assembly viewer program, jPAVE.

Download Documentation   System Guide PAVE assembly with jPAVE interface   Demo   Benchmark (see paper) PAVE assembly with Web interface*   Basil   Ginger-Turmeric   Cotton   Maize   * the web interface is not part of the Download.

jPAVE: Contig View

Reference

C. Soderlund, E. Johnson, M. Bomhoff, and A. Descour. (2009) PAVE: Program for Assembling and Viewing ESTs. BMC Genomics 10:400. Link

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