This project is funded in part by National Science Foundation grant IOS-1044821.

PAVE (Program for Assembling and Viewing ESTs) is a software package for assembling, annotating, querying and viewing transcript and expression level data. It was originally written for Sanger ESTs and has been upgraded to support next generation sequencing.

09 Dec 2011 Version 3.0 upgrades (see Release Notes for more detail):

• Assembly: load externally generated transcripts and expression data e.g. assembled Illumina contigs (see Assembly Guide).
• Annotation; annotate unitrans from multiple UniProt or nucleotide databases (see Annotation Guide).
• viewPAVE: query and view alignment of UniProt or Nucleotide hits to a unitran (see View Tour).

Download Documentation   System Guides (Startup&Demo, Assembly, Expression Data, Annotate)   viewPAVE Tour   PAVE Scripts Tour   Release Notes     PAVE assembly with Web interface*   Asian Citrus Psyllid 454   Asian Citrus Psyllid Sanger     *The web interface is not part of the Download. A Java interface (see images on right) is part of the package.

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Reference

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