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This work was funded by USDA-IFAFS grant #11180 titled Web
Resources for the Computation and Display of Physical Mapping Data.
GFF File Description:
GFF Format is a simple tab-delimited format, each line represenenting
feature from the FPC. The features have start and stop coordinates
based on chromosome/contig coordinate system. The GFF file for FPC
is generated using the Bioperl FPC module. See the Bioperl
Module Documentation for details.
Download/View:
Sample script for generating GFF file from FPC using Bioperl FPC
module chromosome.pl
Features Extracted from FPC:
Following is the list of features extracted from FPC using above
script:
- Chromosome
- Contig
- Sequence
- BAC
- Clone
- Frameworkmarker
- Placementmarker
- Electronicmarker
- Markers
Download/View:sample.gff
Uploading Data to MySQL database for GBrowse:
See the GBrowse
CONFIGURE_HOWTO.txt file for details on how to create the database
for GBrowse.
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