The University of Arizona
Solanum Trichomes
EST Contigs
 
Home | Trichomes Overview

This work has been funded in part by NSF grant 0604336
For more information, see The Solanum Trichome Project
This site was developed in collaboration with the Gang lab

Reference: McDowell, E.T., Kapteyn, J., Schmidt, A., Li, C., Kang, J.H., Descour, A., Shi, F., Larson, M., Schilmiller, A., An, L., Jones, A.D., Pichersky, E., Soderlund, C.A. and Gang, D.R. (2011) Comparative functional genomic analysis of Solanum glandular trichome types, Plant Physiol, 155, 524-539. Link


Species-specific assemblies
(follow links to the EST assembly and analysis for each species)

Species Cultivar Librariesa (#ESTs)b #ESTs #Contigs #Singletons
Common tomato
S.lycopersicum
M82:
LA3475:
Type1 (831), Type7 (791)
Type6 (225k), Stem (278k)
507626 28475 53366
Currant tomato
S.pimpinellifolium
LA1589:Type6 (227k) 227505 12548 30565
Wild tomato
S.habrochaites
LA1777:
PI126449:
Type1 (978), Type4 (1425), Type6 (224k), Leaves (108k)
Type6 (15000)
349539 16905 30197
Wild tomato
S.pennellii
LA0716: Type4 (1277), Type6 (1137), Leaves (276k) 278343 18871 29107
Wild tomato
S.arcanum (S.peruvianum)
LA1708:Stem (415k) 415559 24437 46162
   aAll libraries are from the trichomes of leaves except for stem, which is the total trichomes from stem.
   bThe numbers with a "k" (for 1000's) are 454 data, whereas the others are Sanger.

Summary of Type information
     Same type/same species involving 454 were assembled into consensus sequences for use in Cross species assemblies above.

Type Species (#ESTs) #ESTs
Type1 lyc (831), hab (978) 1809
Type4 hab (1425), pen (1277) 2702
Type6 lyc (225k), pim (227k), hab (224k+15000), pen (1137) 691k
Type7 lyc (791) 791
Total trichomes leaves pen (275k), hab (108k) 386k
Total trichomes stem lyc (278k), arc (415k) 693k


Email Comments To: pave@agcol.arizona.edu
Last Modified Wednesday April 25, 2012 17:47 PM and 37 seconds