Cotton  
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This work was funded by the NSF Plant Genome Program #0211700.
See Comparative Evolutionary Genomics of Cotton for further details.
See Udall et al. (2006). A global assembly of cotton ESTs. Genome Research 16:441.

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ESTs: Contigs:
(eg. GR__Eb45J05.f) (eg. Cotton12_15913_01)

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  This tool can be used to search for contigs containing ESTs from selected libraries. The advanced search can also be used to search for relative expressions of ESTs from specific libraries. With the advanced search tool you can filter results based inclusion of ESTs from selected libraries, UniProt matches, length of consensus, etc.. You can also apply different test statistics to identify differential expression of libraries within contigs.


Cotton Libraries
LibID Organism Tissue Stage Treatment Size
GA__Ea Gossypium arboreum (AKA8401) cotton fiber 7 to 10 days post anthesis none 31242
GH_ACXE Gossypium hirsutum (AcB47In) expanded foliage leaves of 5 -7 week-old plants 8-14 hours post-innoculation vs non-treated Xanthomonas - suppression subtractive hybridization cDNA library 600
GH_ACXL Gossypium hirsutum (AcB47In) expanded foliage leaves of 5 -7 week-old plants 45-60 hours post-innoculation vs untreated Xanthomonas - suppression subtractive hybridization 773
GH_ACXM Gossypium hirsutum (AcB47In) expanded foliage leaves of 5 -7 week-old plants 20-30 hours post-innoculation vs untreated leaves Xanthomonas - suppression subtractive hybridization 910
GH_BNL Gossypium hirsustm (Acala Maxxa) cotton fiber 5 days post-anthesis none 8022
GH_CBAZ Gossypium hirsutum (91-D-92) Cotton boll abscission zone pre-absicission none 1306
GH_CFUS Gossypium hirsutum (Delta Emerald) Root and hypocotyl 5 days -old seedlings Fusarium oxysporum 708
GH_CHX Gossypium hirsutum (DeltaPine 16) Ovules -3 to 0 days post-anthesis cyclohexamide 7631
GH_CRH Gossypium hirsutum (Delta Emerald) Root and hypocotyl 5 day cotton seedlings none 1378
GH_ECOT Gossypium hirsutum (DeltaPine62) cotyledon 3 day old no light - etiolated 2357
GH_ECT Gossypium hirsutum (Stoneville 7A gl) seedling 18 h germinated low light (etiolated) - 18 hr 2727
GH_FOX Gossypium hirsutum Fiber and ovule -3 to +1 days post-anthesis none 6896
GH_IME Gossypium hirsutum Immature embryo 21-30 dpa none 886
GH_IMX Gossypium hirsutum (AcB47In) expanded foliage leaves of 5 -7 week-old plants 8, 14, 20, 30, 45, 60 hours post-innoculation vs. untreated leaves Xanthomonas - suppression subtractive hybridization cDNA library 888
GH_LDDS Gossypium hirsutum (Coker 312) Cotton boll 15 - 20 days post-anthesis drought stress 1014
GH_LDI Gossypium hirsutum (Coker 312) Cotton boll 15 - 20 days post-anthesis none (irrigated) 1428
GH_LSL Gossypium hirsutum (Sicot) Leaves Late season senesence 1810
GH_MDDS Gossypium hirsutum (Coker 312) Cotton boll 8 - 10 days post-anthesis drought stress 988
GH_MDI Gossypium hirsutum (Coker 312) Cotton boll 8 - 10 days post-anthesis none (irrigated) 946
GH_OCF Gossypium hirsutum (DeltaPine 16) ovules 0 days post-anthesis none 867
GH_ON Gossypium hirsutum (DeltaPine 16) ovules 0 days post-anthesis normalized - subtractive hybridization of GH_OCF 5903
GH_pAR Gossypium hirsutum (T25) Leaves mmm ... probably green none 1036
GH_SCW Gossypium hirsutum (Delta Pine 90) 20 dpa mature fibers 20 dpa (tester) vs. 6 dpa (driver) suppression subtractive hybridization 8912
GH_SDCH Gossypium hirsutum (Coker 312) seedling two leaf stage? chilling stress (? degree C) 207
GH_SDL Gossypium hirsutum (Coker 312) seedling two leaf stage? none 1246
GH_SDLD Gosspyium hirsutum (Coker 312) seedling two leaf stage? drought stress 589
GH_STEM Gossypium hirsutum (DES119) Mature stem stem width? none 6588
GH_SUO Gossypium hirsutum (Zhongmian 12) ovule 0 days post-anthesis none 1240
GR__Ea Gossypium raimondii (GN34) Whole seedings first true leaves none 33671
GR__Eb Gossypium raimondii (GN34) whole flowers -3 to +3 days post-anthesis none 35061