| LibID | Organism | Tissue | Stage | Treatment | Size |
| GA__Ea | Gossypium arboreum (AKA8401) | cotton fiber | 7 to 10 days post anthesis | none | 31242 |
| GH_ACXE | Gossypium hirsutum (AcB47In) | expanded foliage leaves of 5 -7 week-old plants | 8-14 hours post-innoculation vs non-treated | Xanthomonas - suppression subtractive hybridization cDNA library | 600 |
| GH_ACXL | Gossypium hirsutum (AcB47In) | expanded foliage leaves of 5 -7 week-old plants | 45-60 hours post-innoculation vs untreated | Xanthomonas - suppression subtractive hybridization | 773 |
| GH_ACXM | Gossypium hirsutum (AcB47In) | expanded foliage leaves of 5 -7 week-old plants | 20-30 hours post-innoculation vs untreated leaves | Xanthomonas - suppression subtractive hybridization | 910 |
| GH_BNL | Gossypium hirsustm (Acala Maxxa) | cotton fiber | 5 days post-anthesis | none | 8022 |
| GH_CBAZ | Gossypium hirsutum (91-D-92) | Cotton boll abscission zone | pre-absicission | none | 1306 |
| GH_CFUS | Gossypium hirsutum (Delta Emerald) | Root and hypocotyl | 5 days -old seedlings | Fusarium oxysporum | 708 |
| GH_CHX | Gossypium hirsutum (DeltaPine 16) | Ovules | -3 to 0 days post-anthesis | cyclohexamide | 7631 |
| GH_CRH | Gossypium hirsutum (Delta Emerald) | Root and hypocotyl | 5 day cotton seedlings | none | 1378 |
| GH_ECOT | Gossypium hirsutum (DeltaPine62) | cotyledon | 3 day old | no light - etiolated | 2357 |
| GH_ECT | Gossypium hirsutum (Stoneville 7A gl) | seedling | 18 h germinated | low light (etiolated) - 18 hr | 2727 |
| GH_FOX | Gossypium hirsutum | Fiber and ovule | -3 to +1 days post-anthesis | none | 6896 |
| GH_IME | Gossypium hirsutum | Immature embryo | 21-30 dpa | none | 886 |
| GH_IMX | Gossypium hirsutum (AcB47In) | expanded foliage leaves of 5 -7 week-old plants | 8, 14, 20, 30, 45, 60 hours post-innoculation vs. untreated leaves | Xanthomonas - suppression subtractive hybridization cDNA library | 888 |
| GH_LDDS | Gossypium hirsutum (Coker 312) | Cotton boll | 15 - 20 days post-anthesis | drought stress | 1014 |
| GH_LDI | Gossypium hirsutum (Coker 312) | Cotton boll | 15 - 20 days post-anthesis | none (irrigated) | 1428 |
| GH_LSL | Gossypium hirsutum (Sicot) | Leaves | Late season | senesence | 1810 |
| GH_MDDS | Gossypium hirsutum (Coker 312) | Cotton boll | 8 - 10 days post-anthesis | drought stress | 988 |
| GH_MDI | Gossypium hirsutum (Coker 312) | Cotton boll | 8 - 10 days post-anthesis | none (irrigated) | 946 |
| GH_OCF | Gossypium hirsutum (DeltaPine 16) | ovules | 0 days post-anthesis | none | 867 |
| GH_ON | Gossypium hirsutum (DeltaPine 16) | ovules | 0 days post-anthesis | normalized - subtractive hybridization of GH_OCF | 5903 |
| GH_pAR | Gossypium hirsutum (T25) | Leaves | mmm ... probably green | none | 1036 |
| GH_SCW | Gossypium hirsutum (Delta Pine 90) | 20 dpa mature fibers | 20 dpa (tester) vs. 6 dpa (driver) | suppression subtractive hybridization | 8912 |
| GH_SDCH | Gossypium hirsutum (Coker 312) | seedling | two leaf stage? | chilling stress (? degree C) | 207 |
| GH_SDL | Gossypium hirsutum (Coker 312) | seedling | two leaf stage? | none | 1246 |
| GH_SDLD | Gosspyium hirsutum (Coker 312) | seedling | two leaf stage? | drought stress | 589 |
| GH_STEM | Gossypium hirsutum (DES119) | Mature stem | stem width? | none | 6588 |
| GH_SUO | Gossypium hirsutum (Zhongmian 12) | ovule | 0 days post-anthesis | none | 1240 |
| GR__Ea | Gossypium raimondii (GN34) | Whole seedings | first true leaves | none | 33671 |
| GR__Eb | Gossypium raimondii (GN34) | whole flowers | -3 to +3 days post-anthesis | none | 35061 |