*corresponding author
Vyas, M, TW Fisher, R He, W Nelson, G Yin,
JM Cicero, M Willer, R Kim, R Kramer, GA May, JA Crow, CA Soderlund, DR Gang and JK Brown. Expression profiling of adult
and nymph Asian citrus psyllids infected by Candidatus Liberibacter asiaticus:
decided effects on nymphal immunity and development, and on adult energy
metabolism and nutritional exploitation. Accepted by PLoS ONE.
Kim, MJ; F Salvato, JJ Park,
W Nelson, R He, T Balbuena, M Gargouri, G Gang, T Gang, M Willer, R Kim, J
Crow, R Kramer, G May, C Soderlund, J
Thelen, D Gang. Quantitative transcriptional, proteomic and metabolomic
profiling of ginger (Zingiber officinale Rosc.) rhizomes compared to other
tissues. Accepted by The Plant Journel
Soderlund, C*, WM Nelson, SA Goff (2014) Allele Workbench: transcriptome pipeline and interactive graphics for allele-specific expression. PLoS ONE 9(12): e115740. doi: 10.1371/journal.pone.0115740
Fisher, TW, M Vyas, R
He, W Nelson, JM Cicero, M Willer, R Kim, R Kramer, GA May, JA Crow, CA Soderlund, DR Gang and JK Brown
(2014) Comparison of Potato and Asian Citrus Psyllid Adult and Nymph
Transcriptomes Identified Vector Transcripts with Potential Involvement in
Circulative, Propagative Liberibacter Transmission. Pathogens 3(4),
875-907; doi:10.3390/pathogens3040875.
Ortiz M, Legatzki A, Neilson
JW, Fryslie B, Nelson WM, Wing RA, Soderlund
CA, Pryor BM, Maier RM (2014) Making a living while starving in the dark:
metagenomic insights into the energy dynamics of a carbonate cave. ISME J 8: 478-491.
He R, Salvato F, Park JJ, Kim
MJ, Nelson W, Balbuena TS, Willer M, Crow JA, May GD, Soderlund CA, Thelen JJ, Gang DR (2014) A systems-wide comparison
of red rice (Oryza longistaminata) tissues identifies rhizome specific genes
and proteins that are targets for cultivated rice improvement. BMC Plant Biol 14: 46.
Soderlund, C.*,
W. Nelson, M. Willer, and D. Gang (2013) TCW: Transcriptome Computational
Workbench. PLOS ONE 10.1371/journal.pone.0069401.
Fisher T, Nelson W,
Vyas M, He R, Willer M, Gang DR, Soderlund
C, Brown JK (2013) Publicly available website for the identification of
psyllid-'Ca. Liberibacter' interactors using comparative transcriptome
analysis. Phytopathology 103: 44-44.
Varshney RK, Song C, Saxena
RK, Azam S, Yu S, Sharpe AG, Cannon S, Baek J, Rosen BD, Tar'an B, Millan T,
Zhang X, Ramsay LD, Iwata A, Wang Y, Nelson W, Farmer AD, Gaur PM, Soderlund C, Penmetsa RV, Xu C, Bharti
AK, He W, Winter P, Zhao S, Hane JK, Carrasquilla-Garcia N, Condie JA,
Upadhyaya HD, Luo MC, Thudi M, Gowda CL, Singh NP, Lichtenzveig J, Gali KK,
Rubio J, Nadarajan N, Dolezel J, Bansal KC, Xu X, Edwards D, Zhang G, Kahl G,
Gil J, Singh KB, Datta SK, Jackson SA, Wang J, Cook DR (2013) Draft genome
sequence of chickpea (Cicer arietinum) provides a resource for trait
improvement. Nat Biotechnol 31:
240-246.
Koo HJ, McDowell ET,
Ma X, Greer KA, Kapteyn J, Xie Z, Descour A, Kim H, Yu Y, Kudrna D, Wing RA, Soderlund CA, Gang DR (2013) Ginger and
turmeric expressed sequence tags identify signature genes for rhizome identity
and development and the biosynthesis of curcuminoids, gingerols and terpenoids.
BMC Plant Biol 13: 27.
Ortiz,
M., J. Neilson, W. Nelson, A. Legatzke, A. Byrne, Y.Yu, C. Soderlund, B. Pryor, L. Pierson, R. Maier (2013). Profiling Bacterial Diversity and
Taxonomic Composition on Speleothem Surfaces in Kartchner Caverns, AZ. Microbial Ecology 65:371-383.
Buechel,
K., E. McDowell, W. Nelson, A. Descour, M. Hilker, J. Gershenzon, T. Fenning, C. Soderlund, D. R. Gang and T. Meiners.
(2012) An elm EST databases for detection of leaf beetle oviposition-induced
defense genes. BMC Genomics 13:242.
Neilson, J., J. Quade, M. Ortiz, W. M. Nelson, A. Legatzki, F. Tian, M. LaComb, J. Betancourt, R.Wing, C. Soderlund, R. Maier (2012). Life at the hyperarid margin: novel bacterial diversity in arid soils of the Atacama Desert, Chile. Extremophiles 16:553-566.
He,
R., M-J Kim, W. Nelson, T. Balbuena, R. Kim, J. Crow, G. May, J. Thelen, C. Soderlund, D. R. Gang (2012) Next generation sequencing based transcriptomic and
proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals
genes involved in invasiveness and rhizome specificity. Am J Bot,
99:232-247.
Kour,
A., K. Greer, B. Valent, M. Orbach, C.
Soderlund* (2012) MGOS: Development of a community annotation database for
Magnaporthe oryzae . Mol Plant Microbe Interact. 25: 271-278.
Soderlund, C*, M. Bomhoff, and W. Nelson
(2011) SyMAP v3.4: a turnkey synteny system with application to plant genomes. Nucleic Acids Research 10.1093/nar/gkr123.
McDowell, E. T., J. Kapteyn, A.
Schmidt, C. Li, J. Kang, A. Descour, F. Shi, M. Larson, A. Schilmiller, L. An,
A. Jones, E. Pichersky, C. Soderlund,
and D.R. Gang (2011) Comparative functional genomic analysis of Solanum
glandular trichome types. Plant
Physiololgy 155: 524-539.
Soderlund, C*, A. Descour, D. Kudrna,
M. Bomhoff, L. Boyd, J. Currie, A. Angelova, K. Collura, M. Wissotski, E.
Ashley, D. Morrow, J. Fernandes, V. Walbot, and Y. Yu* (2009)
Sequencing, Mapping and Analysis of 27,455 Maize Full-length cDNAs. PLoS Genetics 5:e1000740
Soderlund, C* (2009) Large-scale
experiments for elucidating plant-pathogen interactions for fungi and oomycetes.
Briefing in Bioinformatics, 10:
654-663.
Soderlund, C*, E. Johnson, M. Bomhoff,
and A. Descour (2009) PAVE: Program for assembling and viewing ESTs. BMC Genomics 10:400.
Gu, Y, Y. Ma, N. Huo,
J.P. Vogel, F.M. You, G. R. Lazo, D. M. Hayden, W. M. Nelson, C. Soderlund, J. Dvorak, O. D.
Anderson, M-C Luo (2009) A BAC-based physical map of Brachypodium
distachyon and its comparative analysis with rice and wheat. BMC Genomics, 10: 496.
Nelson, W. and C. Soderlund*
(2009). Integrating Sequence with FPC Fingerprinted Maps. Nucleic Acids Research 1-11 doi:10.1093/nar/gkp034.
Nelson, W., Luo, M., Ma, J., Haller, K., Bharti, A., Messing, J.,
Wing, R., San Miguel, P., Bennetzen, J., and Soderlund*, C. (2008) Methylation-sensitive linking libraries
enhance gene-enriched sequencing of complex genomes and map DNA methylation
domains. BMC Genomics,
9:621doi:10.1186/1471-2164-9-621
Kim, H., B. Hurwitz, Y. Yu,
K. Collura, N. Gill, P. SanMiguel, J.C. Mullikin, C. Maher, W. Nelson, M.
Wissotski, M. Braidotti, D. Kudrna, J.L. Goicoechea, L. Stein, D. Ware, S.A.
Jackson, C. Soderlund, and R.A. Wing
(2008). Construction, alignment and analysis of twelve framework physical maps
that represent the ten genome types of the genus Oryza. Genome Biol 9: R45.
Wei, F., E. Coe, W. Nelson,
A.K. Bharti, F. Engler, E. Butler, H. Kim, J.L. Goicoechea, M. Chen, S. Lee, G.
Fuks, H. Sanchez-Villeda, S. Schroeder, Z. Fang, M. McMullen, G. Davis, J.E.
Bowers, A.H. Paterson, M. Schaeffer, J. Gardiner, K. Cone, J. Messing, C. Soderlund*, and R.A. Wing* (2007).
Physical and genetic structure of the maize genome reflects its complex
evolutionary history. PLoS Genet 3: e123.
Nelson, W.M., J. Dvorak,
M.C. Luo, J. Messing, R.A. Wing, and C. Soderlund*
(2007). Efficacy of clone fingerprinting methodologies. Genomics 89: 160-165.
Gowda, M., R.C. Venu, H. Li,
C. Jantasuriyarat, S. Chen, M. Bellizzi, V. Pampanwar, H. Kim, R.A. Dean, E.
Stahlberg, R. Wing, C. Soderlund,
and G.L. Wang (2007). Magnaporthe grisea infection triggers RNA variation and
antisense transcript expression in rice. Plant
Physiol 144: 524-533.
Gowda, M., R.C. Venu, Y.
Jia, E. Stahlberg, V. Pampanwar, C. Soderlund,
and G.L. Wang (2007). Use of robust-long serial analysis of gene expression to
identify novel fungal and plant genes involved in host-pathogen interactions. Methods Mol Biol 354: 131-144.
Kim, H., P. San Miguel, W.
Nelson, K. Collura, M. Wissotski, J.G. Walling, J.P. Kim, S.A. Jackson, C. Soderlund, and R.A. Wing (2007).
Comparative physical mapping between Oryza sativa (AA genome type) and O.
punctata (BB genome type). Genetics 176: 379-390.
Soderlund*, C., K. Haller, V.
Pampanwar, D. Ebbole, M. Farman, M.J. Orbach, G.L. Wang, R. Wing, J.R. Xu, D.
Brown, T. Mitchell, and R. Dean (2006). MGOS: A resource for studying
Magnaporthe grisea and Oryza sativa interactions. Mol Plant Microbe Interact 19:
1055-1061.
Soderlund*, C., W. Nelson,
A. Shoemaker, A. Paterson. (2006) SyMAP: A system for discovering and viewing
syntenic regions of FPC maps. Genome
Research 16:1159-1168.
Adema, C., M. Luo, B. Hanelt, L. Hertel, J. Marshall, S. Zhang, R.
DeJong, H. Kim, D. Kudrna, R. Wing, C.
Soderlund, M. Knight, F. Lewis, R. Caldeira, L. Jannotti-Passos, O.
Carvalho, E. Loker (2006) A bacterial artificial chromosome library for Biomphalaria glabrata, intermediate
snail host of Schistosoma mansoni. Mem Inst Oswaldo Cruz, Rio de Janeiro,
101(Suppl. I): 167-177.
Udall,
J. A., J. Swanson, K. Haller, R.A. Rapp, M.E. Sparks, J. Hatfield, Y. Yu, Y.
Wu, A.B. Arpat, B.A. Sickler, T.A. Wilkins, J.-Y. Guo, X.-Y. Chen, J.
Scheffler, E. Taliercio, R. Turley, H. McFadden, P. Payton, R. Allen, D. Zhang,
C. Haigler, C. Wilkerson, J. Suo, S.R. Schulze, M.L. Pierce, M. Essenberg, H.
Kim, D.J. Llewellyn, E.S. Dennis, D. Kudrna, R. Wing, A.H. Paterson, C. Soderlund, and J.F. Wendel1 (2006) A
global assembly of cotton ESTs. Genome
Research 16:441-450.
Ammiraju,
J., M. Luo, J. Goicoechea, W. Wang, D. Kudrna, C. Mueller, J. Talag, H. Kim, N.
Sisneros, B. Blackmon, E. Fang, J. Tomkins, D. Brar, D. MacKill, S. McCouch, N.
Kurata, G. Lambert, D. Galbraith, K. Arumuganathan, K. Rao, J. Walling, N.
Gill, Y. Yu, P. SanMiguel, C. Soderlund,
S. Jackson, and RA. Wing (2005) The Oryza bacterial artificial chromosome library
resource: Construction and analysis of 12 deep-coverage large-insert BAC
libraries that represent the 10 genome types of the genus Oryza. Genome Research 16:140-147.
Bowers J, M. Arias, R. Asher, J. Avise, R.
Ball, G. Brewer, R. Buss, A. Chen, T. Edwards, J. Estill, H. Exum, V. Goff, K.
Herrick, C. Steele, S. Karunakaran, G. Lafayette, C. Lemke, B. Marler, S.
Masters, J. McMillan, L. Nelson, G. Newsome, C. Nwakanma, R. Odeh, C. Phelps,
E. Rarick, C. Rogers, S. Ryan, K. Slaughter, C. Soderlund, H. Tang, R. Wing, A. Paterson (2005) Comparative
physical mapping links conservation of microsynteny to chromosome structure and
recombination in grasses. Proc Natl Acad
Sci U S A 102:1320-1321
Nelson, W, A Bharti,
E Butler, F Wei, G Fuks, H Kim, R Wing, J
Messing, and C Soderlund*
(2005). Whole-Genome Validation of High-Information-Content Fingerprinting. Plant Physiology, 139:27-38.
Donofrio N, R. Rajagopalon, D. Brown, S. Diener, D. Windham, S. Nolin,
A. Floyd, T. Mitchell, N. Galadima, S. Tucker, M. Orbach, G. Patel, M. Farman,
V. Pampanwar, C. Soderlund, Y. H.
Lee, and R. A. Dean (2005) PACLIMS: a component LIM system for high-throughput
functional genomic analysis. BMC
Bioinformatics 6:94.
Wing, R.A., J.S.S. Ammiraju, M. Luo, H.R. Kim, Y. Yu,
D. Kudrna, J.L. Goicoechea, W. Wang, W. Nelson, K. Rao, D. Brar, D.J. Mackill,
B. Han, C. Soderlund, L. Stein, P.
SanMiguel, and S. Jackson (2005). The Oryza Map Alignment Project: The Golden
Path to Unlocking the Genetic Potential of Wild Rice Species. Plant Molecular, 59:53-62.
Jantasuriyarat, C, M. Gowda,
K. Haller, J. Hatfield, G. Lu, E. Stahlberg , B. Zhou, H. Li, H. Kim, Y. Yu, R.
Dean, R. Wing, C. Soderlund and
G. Wang (2005). Large-scale identification of ESTs involved in rice and rice
blast (Magnaporthe grisea)
interaction. Plant Physiology 138:
105-115.
Pampanwar, V., F, Engler, J.
Hatfield, S. Blundy, G. Gupta, and C.
Soderlund* (2005). FPC Web tools for rice, maize and distribution. Plant Physiology 138:116-126.
Messing, J.,
Bharti, A.K., Karlowski, W.M., Gundlach, H., Kim, H.R., Yu, Y., Wei, F., Fuks,
G., Soderlund, C.A., Mayer, K.F.,
and Wing, R.A. (2004). Sequence composition and genome organization of maize. Proc Natl Acad Sci U S A 101:14349-14354.
Gardiner J, Schroeder S,
Polacco ML, Sanchez-Villeda H, Fang Z, Morgante M, Landewe T, Fengler K, Useche
F, Hanafey M, Tingey S, Chou H, Wing R, Soderlund
C, Coe EH. Anchoring 9,3971 maize expressed sequence tagged unigenes to the
bacterial artificial chromosome contig map by two-dimensional overgo hybridization.
Plant Physiology. 2004 134:1317-1326.
Engler, F., J. Hatfield, W.
Nelson, and C. Soderlund* (2003). Locating
sequence on FPC maps and selecting a minimal tiling path. Genome Research 13:2152-2163.
Yim, Y., G. Davis, N. Duru,
T. Musket, E. Linton, J. Messing, M. McMullen, C. Soderlund, M. Polacco, J. Gardiner, and E. Coe, Jr. (2002)
Characterization of Three Maize Bacterial Artificial Chromosome Libraries
toward Anchoring of the Physical Map to the Genetic Map Using High-Density
Bacterial Artificial Chromosome Filter Hybridization. Plant Physiololgy. 130:1686-1696.
Cone, K., M. McMullen, I. Bi,
G. Davis, Y. Yim, J. Gardiner, M. Polacco, H. Sanchez-Villeda, Z. Fang, S.
Schroeder, S. Havermann, J.. Bowers, A. Paterson, C. Soderlund, F. Engler, R. Wing, and E. Coe, Jr. (2002) Genetic,
Physical, and Informatics Resources for Maize. On the Road to an Integrated
Map. Plant Physiol. 130: 1598-1605.
Coe E, Cone K, McMullen M,
Chen S, Davis G, Gardiner J, Liscum E, Polacco M, Paterson A, Sanchez-Villeda H, Soderlund C, Wing R (2002). Access to
the maize genome: an integrated physical and genetic map. Plant Physiology 128:9-12.
Chen,
M., G. Presting, W. Barbazuk, J. Goicoechea, B. Blackmon, H. Kim, G. Fang, D.
Frisch, Y. Yu, S. Higingbottom, J. Phimphilai, D. Phimphilai, S. Thurmond, B.
Gaudette, P. Li, J. Liu, J. Hatfield, S. Sun, K. Farrar, C. Henderson, L.
Barnett, R. Costa, B. Williams, J. Gilbert, S. Walser, M. Atkins, C. Hall, I.
Bancroft, J. Salse, F. Regad, T. Mohapatra, N. Singh, A. Tyagi, C. Soderlund, R. Dean, R. Wing (2002). An
Integrated physical and genetic map of the rice genome. Plant Cell 14:537-545.
Soderlund*, C., S. Humphrey, A. Dunham
and L. French (2000). Contigs built with fingerprints, markers and FPC v4.7. Genome
Research 10:1772-1787.
Steingruber,
H, A. Dunham, A. Coffey, S. Clegg, g. Howell, G. Maslen, C. Scott, H. Gwilliam,
P. Hunt, E. Sotheran, E. Huckle, S. Hunt, P. Dhami, C. Soderlund, M. Leversha, D. Bentley, M. Ross (1999) High-Resolution
Landmark Framework for the Sequence-Ready Mapping of Xq23-q26.1. Genome
Research 9:751-762.
Soderlund*, C., T. Lau and P. Deloukas
(1998). Z extensions to the RHMAPPER package. Bioinformatics 14:538-539.
Soderlund*, C., I. Longden, and R.
Mott (1997). FPC: a system for building contigs from restriction fingerprinted
clones. CABIOS 13:523-535.
Collins,
J, C. Cole, L. Smink, C. Garrett, M. Leversha, C. Soderlund, G. Maslen, L. Everett, C. Rice, A. Coffey, S. Gregory,
R. Gwilliam, A. Dunham, A. Davies, S. Hassock, C. Todd, H. Lehrach, T. Hulsebos,
J. Weissenbach, B. Morrow, B., R. Kucherlapati, R. Wadey, P. Scambler, U-J.
Kim, M. Simon, N. Carter, R. Durbin, J. Dumanski, D. Bentley, and I. Dunham, I
(1995). High Resolution Integrated Yeast Artificial Chromosome Clone Map of
Human Chromosome 22. Nature 377:367-379
Soderlund*, C. and I. Dunham (1995).
SAM: A system for interactively building marker maps. CABIOS 11:645-655.
Soderlund*, C. and C. Burks (1993).
GRAM and genfragII: solving and testing the single-digest
partially-ordered restriction map problem. CABIOS 10:349-358.
Soderlund*, C., D. Torney, and C.
Burks (1993). Calculating Shared Fragments for the single digest problem. Proceedings
of the 26th Hawaii International Conference on System Sciences: Biotechnology
Track, ACM-IEEE, 1:620-629.
Soderlund*, C., P. Shanmugam, O.
White, and C. Fields (1992). gm: A tool for exploratory analysis of DNA
sequence. Proceedings of the 25th Hawaii International Conference on System
Science: Biotechnology Track. 1:653-662.
White,
O., C. Soderlund, P. Shanmugam, and
C. Fields (1992). Information contents and dinucleotide compositions of plant
intron sequences vary with evolutionary origin. Plant Molecular Biology
19:1057-1064.
Fields,
C. A., J. Newberry, H. Pfeiffer, C. Soderlund,
S. Kirby, and G. McWilliams (1992). MERCURY: a heterogeneous system for spatial
extrapolation of mesoscale meteorological data. Int. J. Man - Machines
Studies, 36:309-326.
Fields,
C. and C. Soderlund (1990). gm: A
practical tool for automated DNA sequence analysis. CABIOS 6:263-270.
McWilliams,
G., S. Kirby, Fields, C., C. Cavendish, M. Coombs, Eskridge, R. Hartley, H. Pfeiffer,
and C. Soderlund (1989). Army
requirements for an intelligent interface to a real-time meteorological
database. Fifth International Conference on Interactive Information and
Processing Systems for Meteorology, Oceanography, and Hydrology. Boston: American
Meteorological Society, pp. 1-2.
Pfeiffer,
J. J., Jr. and C. A. Soderlund
(1988). Solid modelling data structures for computer vision. Proceedings of
the 22nd Asilomar Conference on Signals, Systems, and Computers. New York:
Institute of Electrical and Electronics Engineers, pp. 543-547.
The Rice Chromosome 10
Sequencing Consortium (2003). In-depth view of structure, activity, and
evolution of rice chromosome 10. Science 300:1566-1569
The
International Human Genome Mapping Consortium (2001). A physical map of the
human genome. Nature 409:934-941.
Bentley,
D. et al. (2001) The physical maps for sequencing human chromosomes 1, 6, 9,
10, 13, 20 and X. Nature 409:942-943.
Deloukas,
P. et al. (2001) The DNA sequence and comparative analysis of human chromosome
20. Nature 414:865-871.
Dunham,
I. et al. (1999). Sequence of Human Chromosome 22. Nature 402:489-95
Deloukas,
P. G. D. Schuler, G. Gyapay, E. M. Beasley, C. Soderlund et al. (1998). A physical map of 30,000 human genes. Science
282:744-746.
Mungall AJ,
Humphray SJ, Ranby SA et al. (1997) From long range mapping to sequence-ready
contigs on human chromosome 6, DNA Seq
8:151-154.
Schuler,
et al. (1996). A gene map of the human genome. Science 274:540-546.
Soderlund, C
(2004) Restriction fragment fingerprinting software. In M. Dunn, L. Jorde, P.
Little, S. Subramaniam (ed). Encyclopedia
of Genomics, Proteomics and Bioinformatics. John Wiley and Son.
Nelson, W. and C. Soderlund (2005) Software for
restriction fragment physical maps. In K. Meksem, G. Kahl (ed) The Handbook of Genome Mapping: Genetic and
Physical Mapping, Wiley-VCH, pp. 285-306.
Engler, F., and C. Soderlund (2003). Building physical
maps with FPC. In Ian Dunham (ed). Genomic Mapping and Sequencing. Horizon
Press.pp. 20-236.
Soderlund,
C., F. Engler, J. Hatfield, S. Blundy, M. Chen, Y.Yu, and R. Wing (2002). Mapping
Sequence to FPC Rice Map. In C.Wu, P. Wang, and J. Wang (ed). Computational
Biology and Genome Informatics. Selected papers from CBGI 2001. World
Scientific Publishing. pp 59-79.
Wing,
R.A., Y. Yu, G. Presting, D. Frisch, T. Wood, S-S. Woo, M.A. Budiman, L. Mao, H.R.,
Kim, T. Rambo, E. Fang, B. Blackmon, J.L. Goicoechea, S. Higingbottom, M.
Sasinowski, J. Tomkins, R.A. Dean, C. Soderlund,
R. McCombie, R. Martienssen, M. de la Bastile, R. Wilson, and D. Johnson
(2001). Sequence tagged connector/DNA fingerprint framework for rice genome
sequencing. In G. Khush, D. Brar, and B. Hardy (ed.). Rice Genetics IV, International Rice Institute, Science Publishers.
McCarthy,
L., and C. Soderlund (1998).
Radiation Hybrid Mapping. In Bishop, M.J.(ed) Guide to Human Genome Computing,
Academic Press.
Soderlund, C., S. Gregory and I.
Dunham (1998). Sequence ready clones. In Bishop, M.J.(ed) Guide to Human
Genome Computing, Academic Press.
Gregory,
S., C. Soderlund, and A. Coulson
(1997). Contig assembly by fingerprinting. In Dear, P.H. (ed), Genome
Mapping: A Practical Approach.
Burks,
C., M. Engle, S. Forest, R. Parsons, C. Soderlund,
and P. Storlz (1993). Stochastic optimization tools for genomic sequence
assembly. Automated DNA Sequencing and analysis techniques, Venter, J.C.,
Ed., Academic Press, London